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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56805880_56808669_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56805880 - 56808669
Intron Length:
2790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AGATATTAAATT
Flanking Amino Acid:
CKAFFKRSIQGHNDYICPAT
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
83.2
30.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
79.4
0.66
0.9
73.5
37
Minor 5ss
33.6
-1.9
3
41.3
45.3
Minor BPS
48.8
-0
1.8
64.82
39.8

Associated Gene:

Gene:
ESR2
Ensembl Gene ID:
ENSAPLG00000011895
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012415
56799128 - 56830218
31091