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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56808787_56818230_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56808787 - 56818230
Intron Length:
9444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTGTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TATACATCAATG
Flanking Amino Acid:
KCYEVGMMKCGSRRERCGYR
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
72.2
0.5
1
71.9
38
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
49.4
-0.1
1.9
59.41
41.9

Associated Gene:

Gene:
ESR2
Ensembl Gene ID:
ENSAPLG00000011895
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012415
56799128 - 56830218
31091