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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56823826_56825993_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56823826 - 56825993
Intron Length:
2168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTGGTAACA
Flanking Amino Acid:
LIFAPDLVLDRDEGKCVEGI
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.1
0.54
0.9
69.1
37.1
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
52.6
0.08
2.6
78.35
38.8

Associated Gene:

Gene:
ESR2
Ensembl Gene ID:
ENSAPLG00000011895
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012415
56799128 - 56830218
31091