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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56827899_56830028_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56827899 - 56830028
Intron Length:
2130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
TTTTCCTTCACA
Flanking Amino Acid:
LMLLSHVRHASNKGMEHLLS
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
88.4
0.86
0.6
83.8
24.4
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
81.8
0.99
1.6
91.36
30.2

Associated Gene:

Gene:
ESR2
Ensembl Gene ID:
ENSAPLG00000011895
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012415
56799128 - 56830218
31091