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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56841157_56841487_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56841157 - 56841487
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCATACA
5'SS Class:
major
3'SS Sequence:
CTTATTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
CTTCCCTTATTT
Flanking Amino Acid:
GLQQALLHCQEFHDQSQKLV
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
70.2
35.5
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
80.9
0.69
0.8
73.7
36.8
Minor 5ss
28.9
-2.4
2.8
34.5
41.2
Minor BPS
67
0.61
1.6
81.24
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021888
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023131
56838141 - 56846117
7977