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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56907126_56907550_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56907126 - 56907550
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAAAT
5'SS Class:
major
3'SS Sequence:
TTTCTGAATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
GTTTTCTGAATG
Flanking Amino Acid:
EDSMTQKLEPSNGESDLKSK
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
74.2
36
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
76.2
0.59
1
70.8
38.9
Minor 5ss
33.4
-1.9
3.3
48.6
47.1
Minor BPS
65.6
0.35
1.5
68.72
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029447
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032089
56905387 - 56909481
4095