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Intron Name: Anas_platyrhynchos_platyrhynchos_5_5704563_5778055_R

Intron Information:

Intron Rank:

130402

Intron Class:

major

Intron Phase:

Intron Coordinates:

5704563 - 5778055

Intron Length:

73493

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAGAT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTGAA

U12 Branch Point Sequence:

TGTGAAGAAACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

75.1

35.1

Major BPS

63.3

0.33

1.2

55.1

42.1

Major PPT

95.8

1.03

0.5

96.6

11.7

Minor 5ss

30.7

-2.2

3.7

46.1

49.1

Minor BPS

37.6

-0.9

2.4

53.02

44.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017422

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020667

5704071 - 5841861

137791