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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_57163970_57176494_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57163970 - 57176494
Intron Length:
12525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCACCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CTTTCTTTCACC
Flanking Amino Acid:
EQTYPEVVRMVSCNIFRTLP
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
80.1
28.4
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
84.8
0.78
0.8
81.6
30
Minor 5ss
39.5
-1.2
2.9
49.4
41.4
Minor BPS
68.7
0.57
1.7
77.59
39

Associated Gene:

Gene:
PPP2R5E
Ensembl Gene ID:
ENSAPLG00000013671
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014292
57125806 - 57192873
67068