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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_57176597_57178501_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57176597 - 57178501
Intron Length:
1905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTTTTGA
5'SS Class:
major
3'SS Sequence:
TTCCCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
AAGTCATAAACT
Flanking Amino Acid:
TLEASWPHLQLVYEFFIRFL
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.2
61.6
39.3
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
88.2
0.86
0.7
83.7
24.4
Minor 5ss
42.1
-0.9
2.4
51.2
45
Minor BPS
55.1
0.24
2
72.97
43.4

Associated Gene:

Gene:
PPP2R5E
Ensembl Gene ID:
ENSAPLG00000013671
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014292
57125806 - 57192873
67068