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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_57183992_57185014_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57183992 - 57185014
Intron Length:
1023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAATTT
5'SS Class:
major
3'SS Sequence:
TTTCTCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATTTTCTGAAAT
Flanking Amino Acid:
VRSLSLFHAQLAYCIVQFLE
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
74.9
36.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
88
0.86
0.6
83.6
24.7
Minor 5ss
41.8
-0.9
3.5
64.3
47.2
Minor BPS
68.6
0.66
1.5
84.64
35

Associated Gene:

Gene:
PPP2R5E
Ensembl Gene ID:
ENSAPLG00000013671
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014292
57125806 - 57192873
67068