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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_57185069_57185170_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57185069 - 57185170
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAATATT
5'SS Class:
major
3'SS Sequence:
TCTTCTAATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTCTAATT
Flanking Amino Acid:
LEKDPSLTEPVIRGLMKFWP
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
78.3
35.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.1
0.68
0.9
78.4
33.7
Minor 5ss
43.2
-0.7
3
65.5
39.6
Minor BPS
61.7
0.44
1.6
81.49
34

Associated Gene:

Gene:
PPP2R5E
Ensembl Gene ID:
ENSAPLG00000013671
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014292
57125806 - 57192873
67068