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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_57186234_57187264_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57186234 - 57187264
Intron Length:
1031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGACTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTCCTTTGACT
Flanking Amino Acid:
AKCVSSPHFQVAERALYYWN
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1.2
78.8
38.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
64.5
0.33
1.1
63.7
36.3
Minor 5ss
39.2
-1.2
2.8
49.7
46.6
Minor BPS
76.1
0.9
1.1
87.06
31.6

Associated Gene:

Gene:
PPP2R5E
Ensembl Gene ID:
ENSAPLG00000013671
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014292
57125806 - 57192873
67068