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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_57190004_57192773_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
57190004 - 57192773
Intron Length:
2770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAACTTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTCATCTGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
LTATYKSDRQREKKKEKERE
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.2
79.1
37.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.8
0.63
1
77.4
36.6
Minor 5ss
57.6
0.26
2.5
76.6
38.7
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
PPP2R5E
Ensembl Gene ID:
ENSAPLG00000013671
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014292
57125806 - 57192873
67068