Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_57232246_57233482_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57232246 - 57233482

Intron Length:

1237

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATGCTT

5'SS Class:

strong_major

3'SS Sequence:

TATTTTCTGCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTGTAT

U12 Branch Point Sequence:

GTTTGTGTATTT

Flanking Amino Acid:

NVPYVLIGTQIDLRDDPKTL

Intron Amino Acid Position:

141

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

75.3

40.4

Major BPS

56.3

0.16

1.5

57.4

49.1

Major PPT

75.2

0.57

70.4

40.9

Minor 5ss

36.8

-1.5

3.5

56.4

47.8

Minor BPS

43.7

-0.4

2.4

67.71

44.1

Associated Gene:

Gene:

RHOJ

Ensembl Gene ID:

ENSAPLG00000014028

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014610

57231432 - 57282648

51217