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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_57233648_57237481_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57233648 - 57237481
Intron Length:
3834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
CATCCCATAACA
Flanking Amino Acid:
LLGLYDTAGQEDYNQLRPLS
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.7
34.8
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
73.2
0.52
0.9
69.2
31.3
Minor 5ss
43.5
-0.7
3
58.3
46.6
Minor BPS
63
0.4
1.7
71.49
39.9

Associated Gene:

Gene:
RHOJ
Ensembl Gene ID:
ENSAPLG00000014028
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014610
57231432 - 57282648
51217