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Intron Name: Anas_platyrhynchos_platyrhynchos_5_57237541_57277808_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57237541 - 57277808

Intron Length:

40268

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGAAG

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTCTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTGCAT

U12 Branch Point Sequence:

TGTGCATAAACA

Flanking Amino Acid:

YVPTVFDHYAVTVTVGGQQH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.1

0.94

0.8

78.6

37.2

Major BPS

59.8

0.25

1.5

71.4

45.1

Major PPT

0.9

0.6

88.4

21.2

Minor 5ss

31.6

-2.1

3.1

38.7

46.6

Minor BPS

52.3

0.07

69.26

42.8

Associated Gene:

Gene:

RHOJ

Ensembl Gene ID:

ENSAPLG00000014028

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014610

57231432 - 57282648

51217