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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_57345115_57359779_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57345115 - 57359779
Intron Length:
14665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TGCTTCTGACAC
Flanking Amino Acid:
KQPIEDDSTKGWTKFARLTR
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.2
33.9
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
82.5
0.73
0.7
76.4
25.9
Minor 5ss
38.7
-1.3
2.9
50.6
45.9
Minor BPS
46.8
-0.2
1.8
56.74
41.6

Associated Gene:

Gene:
KCNH5
Ensembl Gene ID:
ENSAPLG00000014161
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014746
57341107 - 57384607
43501