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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5778162_5782237_R

Intron Information:

Intron Rank:
130407
Intron Class:
major
Intron Phase:
Intron Coordinates:
5778162 - 5782237
Intron Length:
4076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTGA
5'SS Class:
major
3'SS Sequence:
CTGTTTACAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
ATGCTCTGATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
65.9
42.7
Major BPS
79
0.72
1
69
38.9
Major PPT
71.3
0.48
1
66.9
38.1
Minor 5ss
41.8
-0.9
3.2
55.7
48.5
Minor BPS
49.7
0.05
1.7
68.51
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017422
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035655
5778130 - 5841861
63732