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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_57798575_57799049_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57798575 - 57799049
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTTAT
5'SS Class:
major
3'SS Sequence:
TCTTCTGTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
TCTTCTGTTACA
Flanking Amino Acid:
AFHFTAMPKLLNYRTKKKIQ
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
0.9
75.6
29.3
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
85
0.79
0.8
79.4
32.6
Minor 5ss
38.3
-1.3
3
50.7
41.2
Minor BPS
51.2
0.03
2.3
70.62
41.9

Associated Gene:

Gene:
SNAPC1
Ensembl Gene ID:
ENSAPLG00000002550
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002577
57794992 - 57801179
6188