Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_57800535_57801033_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57800535 - 57801033

Intron Length:

499

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTGAGTGGG

5'SS Class:

major

3'SS Sequence:

TTGTTTACTTTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAC

U12 Branch Point Sequence:

TTTTGTTTACTT

Flanking Amino Acid:

WRERRFHTIFHGRIRALERN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.5

0.46

1.1

57.2

42.1

Major BPS

89.7

0.98

0.7

89.9

Major PPT

80.1

0.68

0.8

79.1

34.2

Minor 5ss

28.8

-2.4

3.1

36.7

41.6

Minor BPS

60.1

0.39

82.98

39.3

Associated Gene:

Gene:

SNAPC1

Ensembl Gene ID:

ENSAPLG00000002550

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002577

57794992 - 57801179

6188