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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_57806332_57808609_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57806332 - 57808609
Intron Length:
2278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTAGTATC
5'SS Class:
major
3'SS Sequence:
ATTACTGTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTCTTTTAAAA
Flanking Amino Acid:
EQKTIILLSTVSLKQKHFSN
Intron Amino Acid Position:
761

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.1
79.1
34.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.3
0.59
1
69
41.3
Minor 5ss
36.8
-1.5
2.7
44.7
36.8
Minor BPS
63.5
0.42
1.3
70.55
35

Associated Gene:

Gene:
HIF1A
Ensembl Gene ID:
ENSAPLG00000002715
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002810
57806300 - 57836208
29909