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Intron Name: Anas_platyrhynchos_platyrhynchos_5_57808737_57811470_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57808737 - 57811470

Intron Length:

2734

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTGAGTTTT

5'SS Class:

major

3'SS Sequence:

TACTTCTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TTTTTTTTACTT

Flanking Amino Acid:

DGSLFQAVGIGSLFQQTGDR

Intron Amino Acid Position:

719

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

78.7

30.8

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

80.8

0.69

0.8

73.6

36.7

Minor 5ss

43.3

-0.7

3.1

64.1

41.5

Minor BPS

70.1

0.71

1.5

86.64

33.8

Associated Gene:

Gene:

HIF1A

Ensembl Gene ID:

ENSAPLG00000002715

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002810

57806300 - 57836208

29909