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Intron Name: Anas_platyrhynchos_platyrhynchos_5_57811580_57812420_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57811580 - 57812420

Intron Length:

841

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTTTAA

5'SS Class:

major

3'SS Sequence:

CAATTTTTCTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAC

U12 Branch Point Sequence:

AACGTCTTAACA

Flanking Amino Acid:

PSLLTVTLNKRSTAMDEELN

Intron Amino Acid Position:

682

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

74.8

30.7

Major BPS

77.1

0.67

77.9

32.2

Major PPT

74.4

0.55

0.8

73.3

36.6

Minor 5ss

45.7

-0.5

2.5

58.1

46.4

Minor BPS

64.6

0.45

1.4

66.22

40.3

Associated Gene:

Gene:

HIF1A

Ensembl Gene ID:

ENSAPLG00000002715

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002810

57806300 - 57836208

29909