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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_57812816_57813046_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57812816 - 57813046
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TAAGTTTTACCT
Flanking Amino Acid:
TEAKNPFSTQETDLDLEMLA
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
77.6
33.1
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
38.5
-1.3
3.4
55.5
48.6
Minor BPS
52.7
0.16
1.7
68.93
42.3

Associated Gene:

Gene:
HIF1A
Ensembl Gene ID:
ENSAPLG00000002715
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002810
57806300 - 57836208
29909