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Intron Name: Anas_platyrhynchos_platyrhynchos_5_57813170_57813684_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57813170 - 57813684

Intron Length:

515

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTAGTTAC

5'SS Class:

strong_major

3'SS Sequence:

AATGTTTTCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

AAATTTAAAACT

Flanking Amino Acid:

DASTSQSSPEPSSPNDYCFD

Intron Amino Acid Position:

510

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

1.1

79.6

29.7

Major BPS

81.6

0.78

0.8

24.9

Major PPT

75.4

0.57

0.9

68.9

41.1

Minor 5ss

36.9

-1.5

2.7

44.2

43.6

Minor BPS

47.3

-0.1

1.8

64.86

39.5

Associated Gene:

Gene:

HIF1A

Ensembl Gene ID:

ENSAPLG00000002715

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002810

57806300 - 57836208

29909