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Intron Name: Anas_platyrhynchos_platyrhynchos_5_57813963_57814144_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57813963 - 57814144

Intron Length:

182

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGGGTGTG

5'SS Class:

major

3'SS Sequence:

TTAATTTTTATAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TCTCTTTTAATT

Flanking Amino Acid:

TIISLDFSSNESDEQRDEVP

Intron Amino Acid Position:

417

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.9

0.56

64.9

41.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

81.4

0.71

0.8

76.8

37.1

Minor 5ss

29.6

-2.3

3.4

35.9

42.5

Minor BPS

0.74

1.1

80.3

36.2

Associated Gene:

Gene:

HIF1A

Ensembl Gene ID:

ENSAPLG00000002715

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002810

57806300 - 57836208

29909