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Intron Name: Anas_platyrhynchos_platyrhynchos_5_57814366_57815102_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57814366 - 57815102

Intron Length:

737

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTTAA

5'SS Class:

strong_major

3'SS Sequence:

TTCTGTCTGGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

GTTTTTTTAATA

Flanking Amino Acid:

QCIVCVNYVLSGIVQKDLIF

Intron Amino Acid Position:

343

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.1

1.11

0.7

89.3

17.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

76.1

0.59

72.9

37.4

Minor 5ss

39.5

-1.2

2.8

47.2

Minor BPS

76.4

0.82

79.24

30.7

Associated Gene:

Gene:

HIF1A

Ensembl Gene ID:

ENSAPLG00000002715

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002810

57806300 - 57836208

29909