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Intron Name: Anas_platyrhynchos_platyrhynchos_5_57815251_57815399_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57815251 - 57815399

Intron Length:

149

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTAAGTGAG

5'SS Class:

major

3'SS Sequence:

TTTCTTTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCTGAT

U12 Branch Point Sequence:

CCGTGGTTAAAG

Flanking Amino Acid:

SDHLTKTHHDMFTKGQVTTG

Intron Amino Acid Position:

294

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

67.8

37.5

Major BPS

67.4

0.43

1.1

57.1

41.8

Major PPT

96.4

1.04

0.5

95.9

14.1

Minor 5ss

33.9

-1.8

3.2

41.8

40.2

Minor BPS

41.2

-0.8

2.4

43.51

Associated Gene:

Gene:

HIF1A

Ensembl Gene ID:

ENSAPLG00000002715

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002810

57806300 - 57836208

29909