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Intron Name: Anas_platyrhynchos_platyrhynchos_5_57815507_57816840_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57815507 - 57816840

Intron Length:

1334

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAACTAC

5'SS Class:

strong_major

3'SS Sequence:

CCTTGTCTTAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAGCAA

U12 Branch Point Sequence:

CTTGTCTTAAAG

Flanking Amino Acid:

LDMKFSYCDERITELMGYEP

Intron Amino Acid Position:

258

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

71.7

34.8

Major BPS

54.1

0.1

1.4

40.9

Major PPT

70.8

0.47

70.2

34.2

Minor 5ss

43.5

-0.7

58.3

46.6

Minor BPS

60.4

0.19

1.7

63.72

44.3

Associated Gene:

Gene:

HIF1A

Ensembl Gene ID:

ENSAPLG00000002715

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002810

57806300 - 57836208

29909