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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_57817044_57818164_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57817044 - 57818164
Intron Length:
1121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGAAT
5'SS Class:
strong_major
3'SS Sequence:
AACTGTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTCTTCTGAAAT
Flanking Amino Acid:
TVNIKSATWKVLHCTGHIRV
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
80.6
33.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
65.9
0.36
0.9
57.9
37.7
Minor 5ss
34
-1.8
3.2
48.4
47.4
Minor BPS
59.2
0.37
1.6
73.47
43.3

Associated Gene:

Gene:
HIF1A
Ensembl Gene ID:
ENSAPLG00000002715
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002810
57806300 - 57836208
29909