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Intron Name: Anas_platyrhynchos_platyrhynchos_5_57818278_57821120_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57818278 - 57821120

Intron Length:

2843

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGAACG

5'SS Class:

major

3'SS Sequence:

TTACTTTTGCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAC

U12 Branch Point Sequence:

TACTATTTACTT

Flanking Amino Acid:

ELREMLTHRNGPVKKGKEQN

Intron Amino Acid Position:

153

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

0.9

66.9

38.2

Major BPS

78.8

0.71

0.9

69.7

37.1

Major PPT

73.8

0.54

69.6

41.4

Minor 5ss

28.5

-2.5

2.7

29.9

36.3

Minor BPS

52.1

0.14

1.8

69.44

42.1

Associated Gene:

Gene:

HIF1A

Ensembl Gene ID:

ENSAPLG00000002715

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002810

57806300 - 57836208

29909