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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_57821448_57822247_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57821448 - 57822247
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TGGGTCCTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTTACTTTAATA
Flanking Amino Acid:
YLRMRKLLDAGELETEAKME
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.7
41.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
69.1
0.43
0.9
61.9
40
Minor 5ss
38.9
-1.2
2.8
45.8
44.3
Minor BPS
72.3
0.7
1.2
75.57
36.3

Associated Gene:

Gene:
HIF1A
Ensembl Gene ID:
ENSAPLG00000002715
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002810
57806300 - 57836208
29909