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Intron Name: Anas_platyrhynchos_platyrhynchos_5_57822439_57836173_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57822439 - 57836173

Intron Length:

13735

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACCGAGG

5'SS Class:

major

3'SS Sequence:

TTTGTTTATACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTCATATTAACC

Flanking Amino Acid:

DSPGGVSDKKRISSERRKEK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.2

0.36

1.3

55.4

48.8

Major BPS

100

1.24

0.5

100

Major PPT

85.1

0.79

0.9

80.6

36.1

Minor 5ss

36.1

-1.6

3.3

48.9

46.9

Minor BPS

62.2

0.36

1.6

71.9

Associated Gene:

Gene:

HIF1A

Ensembl Gene ID:

ENSAPLG00000002715

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002810

57806300 - 57836208

29909