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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_57889992_57892027_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57889992 - 57892027
Intron Length:
2036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGGGA
5'SS Class:
major
3'SS Sequence:
CTTGGCTGTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
GAGACCTGACTT
Flanking Amino Acid:
CGTPDYIAPELLTTSC*
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
57.5
41.7
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
72.4
0.51
1
69.1
41.8
Minor 5ss
26.9
-2.7
3.7
38.1
46.8
Minor BPS
47.1
-0.1
1.8
59.77
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025419
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028058
57889971 - 57917335
27365