Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58079345_58080191_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58079345 - 58080191

Intron Length:

847

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAAGTACT

5'SS Class:

major

3'SS Sequence:

TCCTTTTATGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

GTTTATTTACCC

Flanking Amino Acid:

LLTVPLIHFPARKAVLMLFF

Intron Amino Acid Position:

216

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

1.1

77.8

36.6

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

83.9

0.76

0.8

80.3

30.5

Minor 5ss

41.3

-1

2.8

62.9

Minor BPS

0.26

1.8

71.93

39.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007812

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043727

58077753 - 58097964

20212

ENSAPLT00000008104

58077753 - 58097966

20214