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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58080317_58084675_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58080317 - 58084675
Intron Length:
4359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TGATTAAGAAAA
Flanking Amino Acid:
SALFGYLTFYDKVDSELLQS
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
42
-0.6
1.9
53.84
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007812
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043727
58077753 - 58097964
20212
ENSAPLT00000008104
58077753 - 58097966
20214