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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58087337_58087548_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58087337 - 58087548
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
GTATGTCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCATTATGT
Flanking Amino Acid:
PLKSAIEPLQVSNSTADCKA
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.1
30.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
76.5
0.6
1
69
41.8
Minor 5ss
37
-1.5
3.3
49.2
47.3
Minor BPS
52
0.14
2.2
76.82
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007812
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008104
58077753 - 58097966
20214