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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58087615_58092390_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58087615 - 58092390
Intron Length:
4776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TGGTGTTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
CATACATTAAAT
Flanking Amino Acid:
FFFMVYFALVVMIKKWSIPC
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
79.4
0.73
1
80.1
32
Major PPT
79
0.65
1
72.9
42.2
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
56.6
0.28
1.8
72.98
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007812
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008104
58077753 - 58097966
20214