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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58157483_58158369_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58157483 - 58158369
Intron Length:
887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCAAATGCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
GTTTCCTCAAAT
Flanking Amino Acid:
SLCPFVRGPVRLLSSELLEP
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
60.4
0.23
1
53.7
40.1
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
71.3
0.75
1.6
87.05
37.8

Associated Gene:

Gene:
MNAT1
Ensembl Gene ID:
ENSAPLG00000008083
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008397
58157364 - 58226047
68684