Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58189204_58194425_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58189204 - 58194425

Intron Length:

5222

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

CATATGCTTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

TTTGTTTTAGCA

Flanking Amino Acid:

KNKQALLDELESSSLPASLL

Intron Amino Acid Position:

162

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

0.8

79.3

28.9

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

73.3

0.52

64.9

40.9

Minor 5ss

30.7

-2.2

2.6

33.5

35.6

Minor BPS

61.8

0.37

1.6

74.26

38.1

Associated Gene:

Gene:

MNAT1

Ensembl Gene ID:

ENSAPLG00000008083

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023246

58157948 - 58226047

68100

ENSAPLT00000008397

58157364 - 58226047

68684