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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58194567_58198726_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58194567 - 58198726
Intron Length:
4160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTAGTTTA
5'SS Class:
major
3'SS Sequence:
GTTTCCGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
AATTTCTGATGT
Flanking Amino Acid:
EVIQKNKIKLTREQEELEEA
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
77.9
32.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
80.7
0.69
0.9
77.2
37
Minor 5ss
40.3
-1.1
2.7
48
42
Minor BPS
48
-0
2
68.1
42.5

Associated Gene:

Gene:
MNAT1
Ensembl Gene ID:
ENSAPLG00000008083
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023246
58157948 - 58226047
68100
ENSAPLT00000008397
58157364 - 58226047
68684