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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58251415_58253910_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58251415 - 58253910
Intron Length:
2496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGTT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
GTAACCTGTATT
Flanking Amino Acid:
LPPVSVAASQGNVSVNPSTS
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
81.3
30.4
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
75.1
0.57
0.7
68.7
31.7
Minor 5ss
35.7
-1.6
3.7
55.7
48.5
Minor BPS
49
0.01
1.8
67.63
42.8

Associated Gene:

Gene:
SIX4
Ensembl Gene ID:
ENSAPLG00000008107
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008409
58248908 - 58255032
6125