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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58310380_58311089_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58310380 - 58311089
Intron Length:
710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGGTGAT
U12 Branch Point Sequence:
CGGGCGGTGATG
Flanking Amino Acid:
QRDRAAAAKNRLQQQVLAQG
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
53.7
0.09
1.4
46.5
47
Major PPT
82
0.72
0.7
76.1
26
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
34.7
-1.3
2.4
33.73
41.5

Associated Gene:

Gene:
SIX6
Ensembl Gene ID:
ENSAPLG00000004766
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004907
58310211 - 58311661
1451