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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58323878_58326625_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58323878 - 58326625
Intron Length:
2748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTAGT
5'SS Class:
major
3'SS Sequence:
TTTTATATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTATAT
Flanking Amino Acid:
AKEHVNQQINLYSVKITEKR
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
72.6
38.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.1
0.86
0.8
86
32.8
Minor 5ss
34.6
-1.8
2.9
48.3
41.7
Minor BPS
60.7
0.41
1.6
78.95
37.3

Associated Gene:

Gene:
C14orf39
Ensembl Gene ID:
ENSAPLG00000004918
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005081
58321375 - 58348670
27296