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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58335469_58335909_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58335469 - 58335909
Intron Length:
441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTACTATTA
5'SS Class:
major
3'SS Sequence:
TTTGTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTGTTAATGATT
Flanking Amino Acid:
LKEDACSDILEPAPFKSFND
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.1
61.7
39.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
89.5
0.89
0.7
85
29.8
Minor 5ss
40.1
-1.1
3.3
47.5
47.9
Minor BPS
48.8
-0
1.9
72.42
38.8

Associated Gene:

Gene:
C14orf39
Ensembl Gene ID:
ENSAPLG00000004918
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005081
58321375 - 58348670
27296