Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58335953_58336365_F

Intron Information:

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

58335953 - 58336365

Intron Length:

413

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTATCCTTG

5'SS Class:

strong_minor

3'SS Sequence:

CTTAACATGAAAG|T

3'SS Class:

strong_BPS

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

TGTCCCTTAACA

Flanking Amino Acid:

FKSFNDWALHIASLRQKTQE

Intron Amino Acid Position:

186

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.3

0.15

1.3

55.3

44.3

Major BPS

71.2

0.53

70.3

31.9

Major PPT

52.7

0.06

1.2

52.8

40.3

Minor 5ss

90.2

1.35

1.1

85.6

31.5

Minor BPS

83.9

1.06

1.1

86.26

31.8

Associated Gene:

Gene:

C14orf39

Ensembl Gene ID:

ENSAPLG00000004918

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005081

58321375 - 58348670

27296