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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58340803_58342171_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58340803 - 58342171
Intron Length:
1369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TGCAATGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTTGCAATG
Flanking Amino Acid:
SSSHAENPSQMVMDTAWTNN
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
74.4
41.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
65.7
0.35
1
61.8
44.1
Minor 5ss
47.2
-0.3
2.6
66.5
44.6
Minor BPS
47.8
-0.3
2.2
62.38
40.7

Associated Gene:

Gene:
C14orf39
Ensembl Gene ID:
ENSAPLG00000004918
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005081
58321375 - 58348670
27296