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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58342258_58342355_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58342258 - 58342355
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAA
U12 Branch Point Sequence:
AGCAGTGTAACT
Flanking Amino Acid:
TASLQSQMQFRQGVPPKQVT
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
67.1
0.42
1
59
37.9
Major PPT
86.8
0.83
0.7
85.5
29.2
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
43
-0.4
2.3
59.2
44.3

Associated Gene:

Gene:
C14orf39
Ensembl Gene ID:
ENSAPLG00000004918
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005081
58321375 - 58348670
27296