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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58343600_58344650_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58343600 - 58344650
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTCTTTTAAAC
Flanking Amino Acid:
EPKDSSYIPQKIHTYFKSNE
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
77.7
32
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
79.5
0.66
0.9
77.4
34.7
Minor 5ss
33.3
-1.9
3.2
39.8
40.3
Minor BPS
68.8
0.57
1.3
76.65
32.7

Associated Gene:

Gene:
C14orf39
Ensembl Gene ID:
ENSAPLG00000004918
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005081
58321375 - 58348670
27296