About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_58344809_58345329_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
58344809 - 58345329
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTATGATCT
5'SS Class:
weak_major
3'SS Sequence:
TCTGTCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCTGTCTTTACA
Flanking Amino Acid:
TQFSKTPPFDFIHNFGCEEG
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.4
0.34
1.1
62.5
36.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85.7
0.8
0.8
79.7
32.4
Minor 5ss
49.2
-0
2.8
71.9
38.9
Minor BPS
60.1
0.31
1.8
70.34
42.1

Associated Gene:

Gene:
C14orf39
Ensembl Gene ID:
ENSAPLG00000004918
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005081
58321375 - 58348670
27296